EDP Sciences logo
Subscriber Authentication Point
Search
Menu
All issues Math. Model. Nat. Phenom., 3 2 (2008) 85-97 Article references

Articles citing this article

The Citing articles tool gives a list of articles citing the current article.
The citing articles come from EDP Sciences database, as well as other publishers participating in CrossRef Cited-by Linking Program. You can set up your personal account to receive an email alert each time this article is cited by a new article (see the menu on the right-hand side of the abstract page).

Cited article:

This article has been cited by the following article(s):

Engineered Bacteria for Short-Chain-Fatty-Acid-Repressed Expression of Biotherapeutic Molecules

Kineret Serebrinsky-Duek, Maria Barra, Tal Danino, Daniel Garrido and Jasna Kovac
Microbiology Spectrum 11 (2) (2023)
DOI: 10.1128/spectrum.00049-23
See this article

Bye bye, linearity, bye: quantification of the mean for linear CRNs in a random environment

Mark Sinzger-D’Angelo, Sofia Startceva and Heinz Koeppl
Journal of Mathematical Biology 87 (3) (2023)
DOI: 10.1007/s00285-023-01973-x
See this article

Sophie Fischer-Holzhausen and Susanna Röblitz
(2023)
DOI: 10.1101/2023.01.17.523407
See this article

Stephen Thomas, Ayatollah Samir El-Zayat, James Gurney, Jennifer Rattray and Sam P. Brown
(2023)
DOI: 10.1101/2023.02.23.529764
See this article

Marcos Guilherme Vieira Junior, Adriano Maurício de Almeida Côrtes, Flávia Raquel Gonçalves Carneiro, Nicolas Carels and Fabrício Alves Barbosa da Silva
(2023)
DOI: 10.1101/2023.04.25.538198
See this article

An Efficient and Robust Underwater Image Compression Scheme Based on Autoencoder

Jiahui Liu, Fei Yuan, Chang Xue, Zhenyu Jia and En Cheng
IEEE Journal of Oceanic Engineering 48 (3) 925 (2023)
DOI: 10.1109/JOE.2023.3249243
See this article

A mathematical model of protein subunits COVID-19 vaccines

Samaneh Gholami, Chapin S. Korosec, Suzan Farhang-Sardroodi, et al.
Mathematical Biosciences 358 108970 (2023)
DOI: 10.1016/j.mbs.2023.108970
See this article

A General Approach for the Modelling of Negative Feedback Physiological Control Systems

Alfonso Maria Ponsiglione, Francesco Montefusco, Leandro Donisi, Annarita Tedesco, Carlo Cosentino, Alessio Merola, Maria Romano and Francesco Amato
Bioengineering 10 (7) 835 (2023)
DOI: 10.3390/bioengineering10070835
See this article

Theoretical and computational tools to model multistable gene regulatory networks

Federico Bocci, Dongya Jia, Qing Nie, Mohit Kumar Jolly and José Onuchic
Reports on Progress in Physics 86 (10) 106601 (2023)
DOI: 10.1088/1361-6633/acec88
See this article

A multiscale hybrid model for exploring the effect of Resolvin D1 on macrophage polarization during acute inflammation

Jeroen F. Uleman, Emiliano Mancini, Rushd F.M. Al-Shama, et al.
Mathematical Biosciences 359 108997 (2023)
DOI: 10.1016/j.mbs.2023.108997
See this article

Laura Sánchez-Gómez and Moisés Santillán
(2023)
DOI: 10.1101/2023.04.17.537116
See this article

A New Model of Hemoglobin Oxygenation

Igor A. Lavrinenko, Gennady A. Vashanov, José L. Hernández Cáceres, Anatoly S. Buchelnikov and Yury D. Nechipurenko
Entropy 24 (9) 1214 (2022)
DOI: 10.3390/e24091214
See this article

Shweta Chakraborty, Parul Singh and Aswin Sai Narain Seshasayee
(2022)
DOI: 10.1101/2022.06.15.496256
See this article

Breschine Cummins, Justin Vrana, Robert C. Moseley, Hamed Eramian, Anastasia Deckard, Pedro Fontanarrosa, Daniel Bryce, Mark Weston, George Zheng, Joshua Nowak, Francis C. Motta, Mohammed Eslami, Kara Layne Johnson, Robert P. Goldman, Chris J. Myers, Tessa Johnson, Matthew W. Vaughn, Niall Gaffney, Joshua Urrutia, Shweta Gopaulakrishnan, Vanessa Biggers, Trissha R. Higa, Lorraine A. Mosqueda, Marcio Gameiro, Tomáš Gedeon, Konstantin Mischaikow, Jacob Beal, Bryan Bartley, Tom Mitchell, Tramy T. Nguyen, Nicholas Roehner and Steven B. Haase
(2022)
DOI: 10.1101/2022.06.10.495560
See this article

Kinetics of Bacterial Adaptation, Growth, and Death at Didecyldimethylammonium Chloride sub-MIC Concentrations

Adrián Pedreira, José A. Vázquez and Míriam R. García
Frontiers in Microbiology 13 (2022)
DOI: 10.3389/fmicb.2022.758237
See this article

Emergent dynamics of a three-node regulatory network explain phenotypic switching and heterogeneity: a case study of Th1/Th2/Th17 cell differentiation

Atchuta Srinivas Duddu, Sauma Suvra Majumdar, Sarthak Sahoo, et al.
Molecular Biology of the Cell 33 (6) (2022)
DOI: 10.1091/mbc.E21-10-0521
See this article

Modelling the Collective Mechanical Regulation of the Structure and Morphology of Epithelial Cell Layers

Hamid Khataee, Madeleine Fraser and Zoltan Neufeld
Frontiers in Cell and Developmental Biology 10 (2022)
DOI: 10.3389/fcell.2022.767688
See this article

Understanding the Genome-Wide Transcription Response To Various cAMP Levels in Bacteria Using Phenomenological Models

Shweta Chakraborty, Parul Singh, Aswin Sai Narain Seshasayee and Richard A. Notebaart
mSystems 7 (6) (2022)
DOI: 10.1128/msystems.00900-22
See this article

Minimizing Severity of Dengue Serotype 1 Infection By Transmissible Interfering Particles

Aminath Shausan, Chris Drovandi and Kerrie Mengersen
SSRN Electronic Journal (2022)
DOI: 10.2139/ssrn.4108267
See this article

Data-driven dynamical modelling of a pathogen-infected plant gene regulatory network: A comparative analysis

Mathias Foo, Leander Dony and Fei He
Biosystems 219 104732 (2022)
DOI: 10.1016/j.biosystems.2022.104732
See this article

On the adapting ability of living organisms to stationary and non-stationary electromagnetic fields

G Roşu, S Spandole-Dinu, A-M Catrina, et al.
IOP Conference Series: Materials Science and Engineering 1254 (1) 012024 (2022)
DOI: 10.1088/1757-899X/1254/1/012024
See this article

Buffering variability in cell regulation motifs close to criticality

Daniele Proverbio, Arthur N. Montanari, Alexander Skupin and Jorge Gonçalves
Physical Review E 106 (3) (2022)
DOI: 10.1103/PhysRevE.106.L032402
See this article

Deciphering landscape dynamics of cell fate decision via a Lyapunov method

Chun Li, Jinxin Dong, Jing Li, et al.
Computational Biology and Chemistry 98 107689 (2022)
DOI: 10.1016/j.compbiolchem.2022.107689
See this article

Mark Sinzger-D’Angelo, Sofia Startceva and Heinz Koeppl
(2022)
DOI: 10.1101/2022.08.26.505415
See this article

Comparative Analysis of Cell Metabolic Activity Sensing by Escherichia coli rrnB P1-lux and Cd Responsive-Lux Biosensors: Time-Resolved Experiments and Mechanistic Modelling

Eva Delatour, Christophe Pagnout, Marie L. Zaffino and Jérôme F. L. Duval
Biosensors 12 (9) 763 (2022)
DOI: 10.3390/bios12090763
See this article

Prediction of lubrication layer properties of pumped concrete based on flow induced particle migration

Xiangyu Xie, Lihai Zhang, Caijun Shi and Xuemei Liu
Construction and Building Materials 322 126115 (2022)
DOI: 10.1016/j.conbuildmat.2021.126115
See this article

Analysis of decay kinetics of the cytosolic calcium transient induced by oxytocin in rat myometrium smooth muscle cells

S. O. Karakhim, S. G. Shlykov, L. G. Babich and D. V. Sinko
Journal of Muscle Research and Cell Motility 42 (1) 117 (2021)
DOI: 10.1007/s10974-021-09598-7
See this article

Hamid Khataee, Madeleine Fraser and Zoltan Neufeld
(2021)
DOI: 10.1101/2021.08.30.458304
See this article

Hybrid reaction–diffusion and clock-and-wavefront model for the arrest of oscillations in the somitogenesis segmentation clock

Jesús Pantoja-Hernández, Víctor F. Breña-Medina and Moisés Santillán
Chaos: An Interdisciplinary Journal of Nonlinear Science 31 (6) (2021)
DOI: 10.1063/5.0045460
See this article

A systems approach to elucidate personalized mechanistic complexities of antibody-Fc receptor activation post-vaccination

Melissa M. Lemke, Milla R. McLean, Christina Y. Lee, et al.
Cell Reports Medicine 2 (9) 100386 (2021)
DOI: 10.1016/j.xcrm.2021.100386
See this article

COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes

Adrianne L. Jenner, Rosemary A. Aogo, Sofia Alfonso, et al.
PLOS Pathogens 17 (7) e1009753 (2021)
DOI: 10.1371/journal.ppat.1009753
See this article

Altering transcription factor binding reveals comprehensive transcriptional kinetics of a basic gene

Achim P Popp, Johannes Hettich and J Christof M Gebhardt
Nucleic Acids Research 49 (11) 6249 (2021)
DOI: 10.1093/nar/gkab443
See this article

A mean-field approach for modeling the propagation of perturbations in biochemical reaction networks

Michelle Przedborski, David Sharon, Steven Chan and Mohammad Kohandel
European Journal of Pharmaceutical Sciences 165 105919 (2021)
DOI: 10.1016/j.ejps.2021.105919
See this article

Atchuta Srinivas Duddu, Sauma Suvra Majumdar, Sarthak Sahoo, Siddharth Jhunjhunwala and Mohit Kumar Jolly
(2021)
DOI: 10.1101/2021.11.03.465892
See this article

Chemical Master Equation for Large Biological Networks

Don Kulasiri and Rahul Kosarwal
Chemical Master Equation for Large Biological Networks 157 (2021)
DOI: 10.1007/978-981-16-5351-3_7
See this article

Pseudogenes

Andrew Dhawan
Methods in Molecular Biology, Pseudogenes 2324 105 (2021)
DOI: 10.1007/978-1-0716-1503-4_7
See this article

Adrianne L. Jenner, Rosemary A. Aogo, Sofia Alfonso, Vivienne Crowe, Amanda P. Smith, Penelope A. Morel, Courtney L. Davis, Amber M. Smith and Morgan Craig
(2021)
DOI: 10.1101/2021.01.05.425420
See this article

Michelle Przedborski, David Sharon, Steven Chan and Mohammad Kohandel
(2021)
DOI: 10.1101/2021.01.26.428329
See this article

Allostery through DNA drives phenotype switching

Gabriel Rosenblum, Nadav Elad, Haim Rozenberg, et al.
Nature Communications 12 (1) (2021)
DOI: 10.1038/s41467-021-23148-2
See this article

Segmentation-clock synchronization in circular-lattice networks of embryonic presomitic-mesoderm cells

Jesús Pantoja-Hernández and Moisés Santillán
AIMS Mathematics 6 (6) 5817 (2021)
DOI: 10.3934/math.2021344
See this article

Modeling the Relationship Between Antibody-Dependent Enhancement and Disease Severity in Secondary Dengue Infection

Felipe de A. Camargo, Mostafa Adimy, Lourdes Esteva, Clémence Métayer and Cláudia P. Ferreira
Bulletin of Mathematical Biology 83 (8) (2021)
DOI: 10.1007/s11538-021-00919-y
See this article

Dynamic of Cytokine Storm in Human Inflammatory Response of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV)-Induced Disease

A Wiraya, L Fitriana, Triyanto and R Setiawan
Journal of Physics: Conference Series 1808 (1) 012054 (2021)
DOI: 10.1088/1742-6596/1808/1/012054
See this article

Analysing how changes in the health status of healthcare workers affects epidemic outcomes

I. Phadke, A. McKee, J.M. Conway and K. Shea
Epidemiology and Infection 149 (2021)
DOI: 10.1017/S0950268821000297
See this article

Mathematical Analysis for the Hystereses of a Soft Ferromagnetic Steel by a Modified Rayleigh Model

Andrea Paesano, Tayla Jaqueline B. Alves, Rafael Franco Ferreira, et al.
IEEE Transactions on Magnetics 56 (4) 1 (2020)
DOI: 10.1109/TMAG.2020.2970154
See this article

Reprogramming Multistable Monotone Systems With Application to Cell Fate Control

Rushina Shah and Domitilla Del Vecchio
IEEE Transactions on Network Science and Engineering 7 (4) 2940 (2020)
DOI: 10.1109/TNSE.2020.3008135
See this article

Jesús Pantoja-Hernández, Víctor F. Breña-Medina and Moisés Santillán
(2020)
DOI: 10.1101/2020.09.04.283515
See this article

Gabriel Rosenblum, Nadav Elad, Haim Rozenberg, Felix Wiggers and Hagen Hofmann
(2020)
DOI: 10.1101/2020.07.04.187450
See this article

The role of cooperativity in a p53-miR34 dynamical mathematical model

Svetoslav Nikolov, Olaf Wolkenhauer, Julio Vera and Momchil Nenov
Journal of Theoretical Biology 495 110252 (2020)
DOI: 10.1016/j.jtbi.2020.110252
See this article

Effects of dynamical time scale mismatch on time series analysis using event intervals

G.N. Derry, E. Mullen and K.A. Marcelino
Communications in Nonlinear Science and Numerical Simulation 80 104986 (2020)
DOI: 10.1016/j.cnsns.2019.104986
See this article

Modeling the tunability of the dual-feedback genetic oscillator

Yash J. Joshi, Yash K. Jawale and Chaitanya A. Athale
Physical Review E 101 (1) (2020)
DOI: 10.1103/PhysRevE.101.012417
See this article

Cell cycle control and environmental response by second messengers in Caulobacter crescentus

Chunrui Xu, Bronson R. Weston, John J. Tyson and Yang Cao
BMC Bioinformatics 21 (S14) (2020)
DOI: 10.1186/s12859-020-03687-z
See this article

Development of a Pharmacokinetic Model Describing Neonatal Fc Receptor‐Mediated Recycling of HL2351, a Novel Hybrid Fc‐Fused Interleukin‐1 Receptor Antagonist, to Optimize Dosage Regimen

Lien Ngo, Jaeseong Oh, Anhye Kim, Hyun‐moon Back, Won‐ho Kang, Jung‐woo Chae, Hwi‐yeol Yun and Howard Lee
CPT: Pharmacometrics & Systems Pharmacology 9 (10) 584 (2020)
DOI: 10.1002/psp4.12555
See this article

A. Shausan, J. Aaskov, C. Drovandi and K. Mengersen
(2020)
DOI: 10.1101/2020.04.21.052936
See this article

Temperature: A key parameter on soil content reduction simulation in recycled asphalt aggregate

Milkos Borges Cabrera, Tomoaki Satomi and Hiroshi Takahashi
Journal of Cleaner Production 261 121236 (2020)
DOI: 10.1016/j.jclepro.2020.121236
See this article

I. Phadke, A. McKee, J.M. Conway and K. Shea
(2020)
DOI: 10.1101/2020.09.21.20197574
See this article

A theoretical model of neural maturation in the developing chick spinal cord

Piyush Joshi, Isaac Skromne and Allan R. Martin
PLOS ONE 15 (12) e0244219 (2020)
DOI: 10.1371/journal.pone.0244219
See this article

Translational approaches to treating dynamical diseases through in silico clinical trials

Sofia Alfonso, Adrianne L. Jenner and Morgan Craig
Chaos: An Interdisciplinary Journal of Nonlinear Science 30 (12) (2020)
DOI: 10.1063/5.0019556
See this article

Chitosan Hydrogels for Synergistic Delivery of Chemotherapeutics to Triple Negative Breast Cancer Cells and Spheroids

John D. Schneible, Ashlyn T. Young, M. A. Daniele and S. Menegatti
Pharmaceutical Research 37 (7) (2020)
DOI: 10.1007/s11095-020-02864-2
See this article

Polymerization of sarcoplasmic-reticulum calcium-binding proteins might explain observed reticulum kinetics-on-demand behavior

Laura Sánchez-Gómez, Agustín Guerrero-Hernández and Moisés Santillán
Journal of Theoretical Biology 482 109986 (2019)
DOI: 10.1016/j.jtbi.2019.08.017
See this article

A computational study of the gene expression in the tryptophan operon with two types of cooperativity

José Roberto Cantú-González, O. Díaz-Hernández, Elizeth Ramírez-Álvarez, et al.
Advances in Computational Mathematics 45 (4) 1843 (2019)
DOI: 10.1007/s10444-018-09661-x
See this article

Bistable behaviour and medium-dependent post-translational regulation of the tryptophanase operon regulatory pathway in Echerichia coli

David I. Orozco-Gómez, Juan Eduardo Sosa-Hernández, Óscar Adrián Gallardo-Navarro, Jesús Santana-Solano and Moisés Santillán
Scientific Reports 9 (1) (2019)
DOI: 10.1038/s41598-019-41856-0
See this article

Entrainment of superoxide rhythm by menadione in HCT116 colon cancer cells

Uma Kizhuveetil, Meghana V. Palukuri, Priyanshu Sharma, et al.
Scientific Reports 9 (1) (2019)
DOI: 10.1038/s41598-019-40017-7
See this article

Data Science

Sanrong Liu and Haifeng Wang
Communications in Computer and Information Science, Data Science 1059 186 (2019)
DOI: 10.1007/978-981-15-0121-0_15
See this article

Normalized shear strength of trapezoidal corrugated steel webs: Improved modeling and uncertainty propagation

Moussa Leblouba, Samer Barakat, Mohamed Maalej, Salah Al-Toubat and Abdul Saboor Karzad
Thin-Walled Structures 137 67 (2019)
DOI: 10.1016/j.tws.2018.12.034
See this article

Computational Stem Cell Biology

Hussein M. Abdallah and Domitilla Del Vecchio
Methods in Molecular Biology, Computational Stem Cell Biology 1975 363 (2019)
DOI: 10.1007/978-1-4939-9224-9_17
See this article

On signalling and estimation limits for molecular birth-processes

Kris V Parag
Journal of Theoretical Biology 480 262 (2019)
DOI: 10.1016/j.jtbi.2019.07.007
See this article

Endogenous Neuropeptide Nocistatin Is a Direct Agonist of Acid-Sensing Ion Channels (ASIC1, ASIC2 and ASIC3)

Dmitry I. Osmakov, Sergey G. Koshelev, Igor A. Ivanov, Yaroslav A. Andreev and Sergey A. Kozlov
Biomolecules 9 (9) 401 (2019)
DOI: 10.3390/biom9090401
See this article

Identification of regulatory variables for state transition of biological networks

Meichen Yuan, Weirong Hong and Pu Li
Biosystems 181 71 (2019)
DOI: 10.1016/j.biosystems.2019.05.001
See this article

Stochastic cell renewal process and lengthening of cell cycle

A J Fendrik, L Romanelli and E Rotondo
Physical Biology 17 (1) 016004 (2019)
DOI: 10.1088/1478-3975/ab576c
See this article

The influence of inter-particle forces on diffusion at the nanoscale

Francesco Giorgi, Diego Coglitore, Judith M. Curran, et al.
Scientific Reports 9 (1) (2019)
DOI: 10.1038/s41598-019-48754-5
See this article

CHARACTERIZATION OF INTRINSIC AND EXTRINSIC NOISE EFFECTS IN POSITIVELY REGULATED GENES

AARÓN VÁZQUEZ-JIMÉNEZ, MOISÉS SANTILLÁN and JESÚS RODRÍGUEZ-GONZÁLEZ
Journal of Biological Systems 27 (03) 383 (2019)
DOI: 10.1142/S0218339019500165
See this article

Noise in gene expression may be a choice of cellular system

Rajesh Karmakar
International Journal of Modern Physics C 30 (02n03) 1950014 (2019)
DOI: 10.1142/S0129183119500141
See this article

Intelligent Computing Theories and Application

Haifeng Wang and Sanrong Liu
Lecture Notes in Computer Science, Intelligent Computing Theories and Application 11644 708 (2019)
DOI: 10.1007/978-3-030-26969-2_67
See this article

Models of cytokine dynamics in the inflammatory response of viral zoonotic infectious diseases

Linda J S Allen, Colleen B Jonsson, Sophia Jang and Wenjing Zhang
Mathematical Medicine and Biology: A Journal of the IMA 36 (3) 269 (2019)
DOI: 10.1093/imammb/dqy009
See this article

Logic of two antagonizing intra-species quorum sensing systems in bacteria

Mahendra Kumar Prajapat and Supreet Saini
Biosystems 165 88 (2018)
DOI: 10.1016/j.biosystems.2018.01.004
See this article

Homeostasis in a feed forward loop gene regulatory motif

Fernando Antoneli, Martin Golubitsky and Ian Stewart
Journal of Theoretical Biology 445 103 (2018)
DOI: 10.1016/j.jtbi.2018.02.026
See this article

Water molecules ordering in strong electrolytes solutions

A. De Ninno and M. De Francesco
Chemical Physics Letters 705 7 (2018)
DOI: 10.1016/j.cplett.2018.05.044
See this article

Hill functions for stochastic gene regulatory networks from master equations with split nodes and time-scale separation

Ovidiu Lipan and Cameron Ferwerda
Physical Review E 97 (2) (2018)
DOI: 10.1103/PhysRevE.97.022413
See this article

From Continuous to Discontinuous Transitions in Social Diffusion

Paula Tuzón, Juan Fernández-Gracia and Víctor M. Eguíluz
Frontiers in Physics 6 (2018)
DOI: 10.3389/fphy.2018.00021
See this article

Normalized shear strength of trapezoidal corrugated steel webs

Moussa Leblouba, Samer Barakat, Salah Altoubat, Talha M. Junaid and Mohamed Maalej
Journal of Constructional Steel Research 136 75 (2017)
DOI: 10.1016/j.jcsr.2017.05.007
See this article

Identification of optimal strategies for state transition of complex biological networks

Meichen Yuan, Weirong Hong and Pu Li
Biochemical Society Transactions 45 (4) 1015 (2017)
DOI: 10.1042/BST20160419
See this article

Backward-stochastic-differential-equation approach to modeling of gene expression

Evelina Shamarova, Roman Chertovskih, Alexandre F. Ramos and Paulo Aguiar
Physical Review E 95 (3) (2017)
DOI: 10.1103/PhysRevE.95.032418
See this article

Decision Making in an Intracellular Genetic Classifier

L. Abrego, A. Zaikin, I. Tyukin, et al.
Mathematical Modelling of Natural Phenomena 12 (4) 30 (2017)
DOI: 10.1051/mmnp/201712404
See this article

A model of gene expression based on random dynamical systems reveals modularity properties of gene regulatory networks

Fernando Antoneli, Renata C. Ferreira and Marcelo R.S. Briones
Mathematical Biosciences 276 82 (2016)
DOI: 10.1016/j.mbs.2016.03.008
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 3 (2016)
DOI: 10.1007/978-3-319-45318-7_1
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 49 (2016)
DOI: 10.1007/978-3-319-45318-7_4
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 73 (2016)
DOI: 10.1007/978-3-319-45318-7_5
See this article

A Mathematical Model of Granulopoiesis Incorporating the Negative Feedback Dynamics and Kinetics of G-CSF/Neutrophil Binding and Internalization

M. Craig, A. R. Humphries and M. C. Mackey
Bulletin of Mathematical Biology 78 (12) 2304 (2016)
DOI: 10.1007/s11538-016-0179-8
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 7 (2016)
DOI: 10.1007/978-3-319-45318-7_2
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 99 (2016)
DOI: 10.1007/978-3-319-45318-7_7
See this article

Accurate Chemical Master Equation Solution Using Multi-Finite Buffers

Youfang Cao, Anna Terebus and Jie Liang
Multiscale Modeling & Simulation 14 (2) 923 (2016)
DOI: 10.1137/15M1034180
See this article

Marco S. Nobile, Davide Cipolla, Paolo Cazzaniga and Daniela Besozzi
118 (2016)
DOI: 10.1002/9781119079453.ch6
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 31 (2016)
DOI: 10.1007/978-3-319-45318-7_3
See this article

Simple Mathematical Models of Gene Regulatory Dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
Lecture Notes on Mathematical Modelling in the Life Sciences, Simple Mathematical Models of Gene Regulatory Dynamics 87 (2016)
DOI: 10.1007/978-3-319-45318-7_6
See this article

Systems and Synthetic Biology

Silpa Bhaskaran, Umesh P. and Achuthsankar S. Nair
Systems and Synthetic Biology 77 (2015)
DOI: 10.1007/978-94-017-9514-2_5
See this article

The utility of simple mathematical models in understanding gene regulatory dynamics

Michael C. Mackey, Moisés Santillán, Marta Tyran-Kamińska and Eduardo S. Zeron
In Silico Biology 12 (1,2) 23 (2015)
DOI: 10.3233/ISB-140463
See this article

Equilibrium switching and mathematical properties of nonlinear interaction networks with concurrent antagonism and self-stimulation

Jomar Fajardo Rabajante and Cherryl Ortega Talaue
Chaos, Solitons & Fractals 73 166 (2015)
DOI: 10.1016/j.chaos.2015.01.018
See this article

A Modular Analysis of the Auxin Signalling Network

Etienne Farcot, Cyril Lavedrine, Teva Vernoux and Roeland M.H. Merks
PLOS ONE 10 (3) e0122231 (2015)
DOI: 10.1371/journal.pone.0122231
See this article

Time-Delayed Models of Gene Regulatory Networks

K. Parmar, K. B. Blyuss, Y. N. Kyrychko and S. J. Hogan
Computational and Mathematical Methods in Medicine 2015 1 (2015)
DOI: 10.1155/2015/347273
See this article

Kinetics on Demand Is a Simple Mathematical Solution that Fits Recorded Caffeine-Induced Luminal SR Ca2+ Changes in Smooth Muscle Cells

Norma C. Perez-Rosas, Norma L. Gomez-Viquez, Adan Dagnino-Acosta, et al.
PLOS ONE 10 (9) e0138195 (2015)
DOI: 10.1371/journal.pone.0138195
See this article

Comparison of the theoretical and real-world evolutionary potential of a genetic circuit

M Razo-Mejia, J Q Boedicker, D Jones, et al.
Physical Biology 11 (2) 026005 (2014)
DOI: 10.1088/1478-3975/11/2/026005
See this article

New improved capacitance–voltage model for symmetrical step junction: a way to a unified model for realistic junctions

Assia Boukredimi and Kheireddine Benchouk
Journal of Computational Electronics 13 (4) 971 (2014)
DOI: 10.1007/s10825-014-0617-5
See this article

Dynamic spatial pattern formation in the sea urchin embryo

Syed Shahed Riaz and Michael C. Mackey
Journal of Mathematical Biology 68 (3) 581 (2014)
DOI: 10.1007/s00285-012-0640-8
See this article

Chemical Kinetics, Stochastic Processes, and Irreversible Thermodynamics

Moisés Santillán
Lecture Notes on Mathematical Modelling in the Life Sciences, Chemical Kinetics, Stochastic Processes, and Irreversible Thermodynamics 77 (2014)
DOI: 10.1007/978-3-319-06689-9_7
See this article

Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration

Mattias Rydenfelt, Robert Sidney Cox, Hernan Garcia and Rob Phillips
Physical Review E 89 (1) (2014)
DOI: 10.1103/PhysRevE.89.012702
See this article

FOUNDATIONS FOR MODELING THE DYNAMICS OF GENE REGULATORY NETWORKS: A MULTILEVEL-PERSPECTIVE REVIEW

ISMAEL SANCHEZ-OSORIO, FERNANDO RAMOS, PEDRO MAYORGA and EDGAR DANTAN
Journal of Bioinformatics and Computational Biology 12 (01) 1330003 (2014)
DOI: 10.1142/S0219720013300037
See this article

Polynomial representations of piecewise-linear differential equations arising from gene regulatory networks

Valeriya Tafintseva, Anna Machina and Arcady Ponosov
Nonlinear Analysis: Real World Applications 14 (3) 1732 (2013)
DOI: 10.1016/j.nonrwa.2012.11.008
See this article

The Goodwin Model: Behind the Hill Function

Didier Gonze, Wassim Abou-Jaoudé and Nick Monk
PLoS ONE 8 (8) e69573 (2013)
DOI: 10.1371/journal.pone.0069573
See this article

What Can Causal Networks Tell Us about Metabolic Pathways?

Rachael Hageman Blair, Daniel J. Kliebenstein, Gary A. Churchill and Andrew G. Clark
PLoS Computational Biology 8 (4) e1002458 (2012)
DOI: 10.1371/journal.pcbi.1002458
See this article

Influence of the feedback loops in the trp operon of B. subtilis on the system dynamic response and noise amplitude

Criseida Zamora-Chimal, Moisés Santillán and Jesús Rodríguez-González
Journal of Theoretical Biology 310 119 (2012)
DOI: 10.1016/j.jtbi.2012.06.014
See this article

Cycling expression and cooperative operator interaction in the trp operon of Escherichia coli

Areli Hernández-Valdez, Moisés Santillán and Eduardo S. Zeron
Journal of Theoretical Biology 263 (3) 340 (2010)
DOI: 10.1016/j.jtbi.2009.12.005
See this article

Oscillation, cooperativity, and intermediates in the self-repressing gene

David Lepzelter, Haidong Feng and Jin Wang
Chemical Physics Letters 490 (4-6) 216 (2010)
DOI: 10.1016/j.cplett.2010.03.029
See this article