Issue |
Math. Model. Nat. Phenom.
Volume 6, Number 6, 2011
Biomathematics Education
|
|
---|---|---|
Page(s) | 61 - 75 | |
Section | Discrete Modeling | |
DOI | https://doi.org/10.1051/mmnp/20116604 | |
Published online | 05 October 2011 |
Using R to Build and Assess Network Models in Biology
Department of Biology, SUNY Geneseo, Geneseo, NY
14454
USA
⋆ Corresponding author. E-mail: hartvig@geneseo.edu
In this paper we build and analyze networks using the statistical and programming environment R and the igraph package. We investigate random, small-world, and scale-free networks and test a standard problem of connectivity on a random graph. We then develop a method to study how vaccination can alter the structure of a disease transmission network. We also discuss a variety of other uses for networks in biology.
Mathematics Subject Classification: 92-01
Key words: networks / graph theory / R / igraph / modeling disease dynamics
© EDP Sciences, 2011
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